CySA - Interactive Cluster Selector for Cytometry Data
CySA provides an interactive Shiny-based tool for analyzing flow and mass cytometry data. It supports self-organizing map (SOM) based clustering, dimension reduction (t-SNE, UMAP, PCA), and statistical comparison of cell populations across sample groups. Users can select cell clusters interactively via 2D scatter plots, dendrograms, or SOM node grids, and explore marker expression patterns across the selected populations.
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singlecellflowcytometryclusteringvisualizationshinyapps
4.30 score 1 stars 218 downloadsCyFj11 - Parse FlowJo V11 Workspace Files and Export to FlowJo V10
Provides functions to parse FlowJo v11 workspace files (.flowjo) and extract gating information, populations, and associated FCS files. Includes utilities for exporting data to FlowJo v10 workspace format. The package enables bidirectional data flow between FlowJo and R/Bioconductor, facilitating reproducible analysis workflows.
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flowcytometrydataimportinfrastructurepreprocessing
3.98 score